Publications

Research papers

Selected and recent publications in knowledge graph alignment, NLP, biomedical information extraction, ontology-based annotation, GraphRAG, and LLM-based reasoning.

For citation counts and the most up-to-date publication list, see my Google Scholar profile.

  1. 2026
    Dissecting GraphRAG: A Modular Analysis of Knowledge Structuring for Factoid Question Answering. N. Nishida, R. F. Munne, S. Liu, N. Tokunaga, Y. Yamagata, F. Cheng, K. Kozaki, Y. Matsumoto. Transactions of the Association for Computational Linguistics.
  2. 2026
    Better Generalizing to Unseen Concepts: An Evaluation Framework and An LLM-Based Auto-Labeled Pipeline for Biomedical Concept Recognition. S. Liu, N. Nishida, F. Cheng, N. Tokunaga, R. F. Munne, Y. Yamagata, K. Kozaki, Y. Matsumoto. EACL.
  3. 2025
    RefineEA: A Modular Framework for LLM-Guided Refinement in Entity Alignment. R. F. Munne, M. M. Rahman, Y. Matsumoto.
  4. 2025
    Entity Profile Generation and Reasoning with LLMs for Entity Alignment. R. F. Munne, M. M. Rahman, Y. Matsumoto. Findings of EMNLP.
  5. 2025
    Lookalike Audience Expansion: A Graph-Based Model with LLMs. R. F. Munne, M. M. Rahman, Y. Matsumoto. SIGIR eCom.
  6. 2025
    MA-COIR: Leveraging Semantic Search Index and Generative Models for Ontology-Driven Biomedical Concept Recognition. S. Liu, N. Nishida, R. F. Munne, N. Tokunaga, Y. Yamagata, K. Kozaki, Y. Matsumoto. ACL Student Research Workshop.
  7. 2025
    From NLI to Classification: Entailment Learning for Low-Resource Text Classification. R. F. Munne, N. Nishida, S. Liu, N. Tokunaga, Y. Yamagata, K. Kozaki, Y. Matsumoto. Proceedings of the 31st Annual Conference of the Association for Natural Language Processing.
  8. 2025
    Zero-Shot Entailment Learning for Ontology-Based Biomedical Annotation Without Explicit Mentions. R. F. Munne, N. Nishida, S. Liu, N. Tokunaga, Y. Yamagata, K. Kozaki, Y. Matsumoto. COLING.
  9. 2025
    Proposal of Methods to Suppress Error Propagation in Information Extraction Pipelines: Oversampling, Filtering-Oriented Learning, and Concept Correspondence. N. Nishida, S. Liu, R. F. Munne, N. Tokunaga, Y. Yamagata, K. Furusaki, Y. Matsumoto. ANLP.
  10. 2025
    Mention-Independent Information Extraction for Ontology Construction from Medical and Biological Literature. N. Nishida, O. El Khettari, S. Liu, R. F. Munne, Y. Yamagata, K. Furusaki, S. Quiniou, S. Chaffron, Y. Matsumoto. ANLP.
  11. 2024
    Mention-Agnostic Information Extraction for Ontological Annotation of Biomedical Articles. O. El Khettari, N. Nishida, S. Liu, R. F. Munne, Y. Yamagata, S. Quiniou, S. Chaffron, Y. Matsumoto. BioNLP, ACL.
  12. 2023
    Attribute Enhancement Using Aligned Entities Between Knowledge Graphs. R. F. Munne, R. Ichise. IEEE International Conference on Semantic Computing.
  13. 2023
    Entity Alignment and Attribute Enhancement Between Knowledge Graphs. R. F. Munne. Ph.D. thesis, The Graduate University for Advanced Studies.
  14. 2022
    Entity Alignment via Summary and Attribute Embeddings. R. F. Munne, R. Ichise. Logic Journal of the IGPL.
  15. 2020
    Joint Entity Summary and Attribute Embeddings for Entity Alignment Between Knowledge Graphs. R. F. Munne, R. Ichise. International Conference on Hybrid Artificial Intelligence Systems.
  16. 2020
    Entity Alignment for Heterogeneous Knowledge Graphs Using Summary and Attribute Embeddings. R. F. Munne, R. Ichise. Japanese Society for Artificial Intelligence Annual Conference.
  17. 2017
    Missing RDF Triples Detection and Correction in Knowledge Graphs. L. Zhao, R. F. Munne, N. Kertkeidkachorn, R. Ichise. Joint International Semantic Technology Conference.