Publications
Research papers
Selected and recent publications in knowledge graph alignment, NLP, biomedical information extraction, ontology-based annotation, GraphRAG, and LLM-based reasoning.
For citation counts and the most up-to-date publication list, see my Google Scholar profile.
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2026
Dissecting GraphRAG: A Modular Analysis of Knowledge Structuring for Factoid Question Answering. N. Nishida, R. F. Munne, S. Liu, N. Tokunaga, Y. Yamagata, F. Cheng, K. Kozaki, Y. Matsumoto. Transactions of the Association for Computational Linguistics.
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2026
Better Generalizing to Unseen Concepts: An Evaluation Framework and An LLM-Based Auto-Labeled Pipeline for Biomedical Concept Recognition. S. Liu, N. Nishida, F. Cheng, N. Tokunaga, R. F. Munne, Y. Yamagata, K. Kozaki, Y. Matsumoto. EACL.
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2025
RefineEA: A Modular Framework for LLM-Guided Refinement in Entity Alignment. R. F. Munne, M. M. Rahman, Y. Matsumoto.
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2025
Entity Profile Generation and Reasoning with LLMs for Entity Alignment. R. F. Munne, M. M. Rahman, Y. Matsumoto. Findings of EMNLP.
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2025
Lookalike Audience Expansion: A Graph-Based Model with LLMs. R. F. Munne, M. M. Rahman, Y. Matsumoto. SIGIR eCom.
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2025
MA-COIR: Leveraging Semantic Search Index and Generative Models for Ontology-Driven Biomedical Concept Recognition. S. Liu, N. Nishida, R. F. Munne, N. Tokunaga, Y. Yamagata, K. Kozaki, Y. Matsumoto. ACL Student Research Workshop.
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2025
From NLI to Classification: Entailment Learning for Low-Resource Text Classification. R. F. Munne, N. Nishida, S. Liu, N. Tokunaga, Y. Yamagata, K. Kozaki, Y. Matsumoto. Proceedings of the 31st Annual Conference of the Association for Natural Language Processing.
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2025
Zero-Shot Entailment Learning for Ontology-Based Biomedical Annotation Without Explicit Mentions. R. F. Munne, N. Nishida, S. Liu, N. Tokunaga, Y. Yamagata, K. Kozaki, Y. Matsumoto. COLING.
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2025
Proposal of Methods to Suppress Error Propagation in Information Extraction Pipelines: Oversampling, Filtering-Oriented Learning, and Concept Correspondence. N. Nishida, S. Liu, R. F. Munne, N. Tokunaga, Y. Yamagata, K. Furusaki, Y. Matsumoto. ANLP.
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2025
Mention-Independent Information Extraction for Ontology Construction from Medical and Biological Literature. N. Nishida, O. El Khettari, S. Liu, R. F. Munne, Y. Yamagata, K. Furusaki, S. Quiniou, S. Chaffron, Y. Matsumoto. ANLP.
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2024
Mention-Agnostic Information Extraction for Ontological Annotation of Biomedical Articles. O. El Khettari, N. Nishida, S. Liu, R. F. Munne, Y. Yamagata, S. Quiniou, S. Chaffron, Y. Matsumoto. BioNLP, ACL.
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2023
Attribute Enhancement Using Aligned Entities Between Knowledge Graphs. R. F. Munne, R. Ichise. IEEE International Conference on Semantic Computing.
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2023
Entity Alignment and Attribute Enhancement Between Knowledge Graphs. R. F. Munne. Ph.D. thesis, The Graduate University for Advanced Studies.
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2022
Entity Alignment via Summary and Attribute Embeddings. R. F. Munne, R. Ichise. Logic Journal of the IGPL.
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2020
Joint Entity Summary and Attribute Embeddings for Entity Alignment Between Knowledge Graphs. R. F. Munne, R. Ichise. International Conference on Hybrid Artificial Intelligence Systems.
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2020
Entity Alignment for Heterogeneous Knowledge Graphs Using Summary and Attribute Embeddings. R. F. Munne, R. Ichise. Japanese Society for Artificial Intelligence Annual Conference.
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2017
Missing RDF Triples Detection and Correction in Knowledge Graphs. L. Zhao, R. F. Munne, N. Kertkeidkachorn, R. Ichise. Joint International Semantic Technology Conference.